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GST
Sep 25, 2025

GST Notice & Order Management: A Practical Guide for Tax Professionals

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Jayant Kulkarni

Suvit

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With India’s Goods and Services Tax (GST) regime becoming increasingly data-driven and compliance-centric, the role of tax professionals has expanded far beyond return filing.

Today, one of the most critical responsibilities for tax professionals is handling GST-related notices and orders issued by tax authorities. These communications often involve legal, procedural, and factual complexities, making prompt and accurate responses essential to safeguard clients' financial and compliance standing.

In recent times, CAs are witnessing a sharp rise in the number of notices triggered by automated data matching systems, analytics, and cross-verification between GST returns, income tax filings, and e-way bills.

Effective management of these notices requires a structured approach, beginning with the correct interpretation of the notice, followed by the professional drafting of replies, maintaining robust documentation, and, if necessary, navigating the appellate process.

This blog offers a comprehensive framework for notice and order management, addressing the real-world challenges faced by professionals while outlining best practices and preventive strategies.

Understanding GST Notices and Orders

Types of GST Notices

  • Scrutiny Notice (Section 61): Issued when the tax authority identifies discrepancies in GST returns (e.g., GSTR-3B vs GSTR-1 mismatches).
  • Show Cause Notice (SCN) under Sections 73/74: For issues like wrongful ITC claim, non-payment of GST, or tax evasion.
  • Audit Notices (Sections 65/66): Initiated by the department or external auditor to examine the taxpayer’s records.
  • Summons (Section 70): Issued to gather evidence, call for documents, or record statements during investigations.
  • Demand Orders: Passed after adjudication, confirming additional tax liability along with interest and penalties.

Common Triggers for GST Notices

  • Claiming Input Tax Credit (ITC) in excess of GSTR-2B data
  • Delay or non-filing of GST returns (monthly/annual)
  • Variance in turnover between GST returns and Income Tax disclosures
  • Discrepancies in e-way bills during goods movement
  • Supplier-side non-compliance impacting buyer’s ITC eligibility.
  • Errors in refund claims, particularly exports and inverted duty refunds

Key Challenges for Tax Professionals

  • Short Timelines: Deadlines for notice responses are often restrictive, leaving limited room for detailed preparation.
  • Technical Constraints: Frequent technical glitches, downtime on the GSTN portal, and difficulty in uploading attachments hinder smooth compliance.
  • Ambiguities in Law: Multiple interpretations exist for specific provisions, increasing litigation risk.
  • High Volume of Notices: Many clients, especially SMEs, are receiving notices simultaneously, creating workload pressure for CAs.
  • Expectations Management: Clients often expect instant resolution, not realizing the complex legal nuances involved.

Practical Framework for Notice Management

First Response Steps

  • Authenticate: Confirm the notice on the GST portal rather than relying solely on email.
  • Analyze: Read carefully to identify the relevant legal provision, the nature of the issue, and the applicable deadline.
  • Document Collection: Gather all relevant documents, including invoices, reconciliations, e-way bills, contracts, and challans, related to the issue.
  • Assess Materiality: For minor clerical errors, submit clarification. For significant discrepancies, strategize with supporting evidence.

Drafting Effective Responses

  • Use a structured reply format:

    • Introduction: Acknowledge the notice details.
    • Factual Statement: Provide the client’s compliance history or background.
    • Clarification with Evidence: Attach reconciliations or documents validating accuracy.
    • Legal Grounds: Quote provisions, departmental circulars, and precedents.
    • Conclusion: Respectfully request notice closure or relief.
  • Maintain a professional, concise, and fact-based tone, avoiding arguments without backing.

Documentation Best Practices

  • Maintain monthly reconciliations: GSTR-1 vs 3B vs Books of Accounts.
  • Archive all compliance filings (returns, challans, refund claims) for statutory retention of 6 years.
  • Digitize client records into a centralized repository for easy retrieval.
  • Implement audit trails for any corrections or amendments made post-filing.

Order Management and Appeals

Reviewing Adjudication Orders

  • Check whether the principle of natural justice was followed (adequate hearing granted).
  • Verify computation of tax, interest, and penalties.
  • Identify if demand was raised based on assumptions without documentary proof.

Appeal Management

  • Appeal before the Appellate Authority under Section 107 within 3 months.
  • Pre-Deposit Condition: 10% of the disputed tax must be paid before filing an appeal.
  • Escalation stages: Appellate Tribunal → High Court → Supreme Court.

Best Practices for Appeals

  • Prepare robust grounds citing factual errors, jurisdictional overreach, or misinterpretation of law.
  • Maintain proper indexing of all evidence to ensure a smooth case presentation.
  • Track notifications, CBIC circulars, and case laws to cite updated positions.
  • File appeals well in advance to avoid last-minute complications.

Proactive Strategies for Tax Professionals

Preventive Compliance

  • Conduct quarterly GST health checks to identify gaps before the department does.
  • Adopt GST automation tools for reconciliations and mismatch reporting.
  • Keep clients informed about evolving law (notifications, amendments, judiciary rulings).

Client Collaboration

  • Train clients to maintain proper supporting documentation (tax invoices, e-way bills, input registers).
  • Encourage timely communication when discrepancies are noticed.
  • Share structured MIS reports with clients summarizing compliance status and potential risk areas.

Role of Technology in GST Notice Management

Technology can significantly improve efficiency in handling notices:

  • Automated Data Syncing: Real-time integration of client GST data with dashboards.
  • Mismatch Reports: Early detection of return discrepancies.
  • Template-Based Auto Replies: Standard draft formats for quicker turnaround.
  • Centralized Repository: Easy access to client-wise notices, responses, and orders.

These advancements allow CAs to focus more on advisory roles rather than repetitive compliance work.

Strengthening Compliance Through Smart Notice Management

For tax professionals in India, GST notice and order management is an inevitable part of client service in the post-GST era.

While challenges persist, ranging from strict timelines to legal ambiguities, a systematic approach grounded in documentation, professional drafting, and proactive compliance reviews ensures effective resolution.

Leveraging technology will further empower accountants to respond promptly and accurately, thereby building client trust and reducing the risk of litigation.

Suvit is launching this feature soon, where its AI system will automatically sync GST-related notices and generate auto-replies based on the data(that you can edit!), ensuring that accountants can respond promptly and accurately to client queries.

This innovation will redefine compliance management by saving time and reducing manual effort for professionals. Stay tuned with us to know when we roll it!

FAQs

Q1. Why do businesses commonly receive GST notices?

Businesses often receive GST notices due to ITC mismatches, discrepancies between GSTR-1 and GSTR-3B, delayed return filing, e-way bill errors, or inconsistencies between GST and Income Tax data.

Q2. What should be the first step after receiving a GST notice?

The first step is to verify the authenticity of the notice on the GST portal, carefully note the response timeline, and gather supporting documents before drafting a reply.

Q3. How can Tax professionals reduce the chances of clients receiving GST notices?

CAs can implement preventive measures, such as conducting regular reconciliations, adopting GST health check audits, and encouraging clients to maintain complete and accurate documentation.

Q4. What is the timeline to file an appeal against a GST order?

An appeal to the Appellate Authority must be filed within 3 months from the date of the order, along with a pre-deposit of 10% of the disputed tax amount.

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